Embedded Files
Here you can find and download the computational tools we have developed for metabolic network analysis. If you encounter any issues, please do not hesitate to contact us. As always, suggestions and comments are greatly welcomed!
Software
Software
MATLAB scripts and examples for efficient loopless optimization of genome-scale stochiometric models. This method supports Gurobi and CPLEX solvers
MATLAB and OCTAVE scripts and examples for generating a uniform random sample from genome-scale stoichiometric models without unfeasible loops. Scripts have been recently updated and incorporate fast pre-processing using Fast-SNP
MATLAB scripts and examples of the GRASP framework for building thermodynamically feasible models of cellular metabolism
MATLAB scripts and examples with an efficient sampling implementation of the Adaptive Direction Sampling algorithm for generating loopless flux samples
MATLAB scripts and examples for the application of different Kernels for SMC-ABC on the simplex
Models
Models
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